Eureka! I found the issue and fixed it!!
Yesterday evening I was thinking about this issue again and I told to myself: there is no way that the GPS and antenna cable is continuous from the head unit to the back of the car to the antenna, there should be one (or more) connection point somewhere and maybe that's what became loose. So today I checked under the drivers seat, because I remember I saw there many cables running and some connections and when I touched it, I felt that I could push it inside. After that I turned on the GPS and voila! 6 out of 12 GPS, fixed, all working!! P.s. I think it was the yellow connector, on the second picture.
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