Let's break it down into parts; mounting, fuel, air, wiring, cooling, accessories, gearbox, exhaust.
Mounting - I'm not entirely sure, check vwvortex, lol
Fuel - You might need the r32 fuel pump, so check flow rates of the vr6 and r32 units and adaptability to the r32 ecu.
Air - Getting air into the engine is easy enough with pod filters, etc... but just remember you'll have to add the MAF in there somewhere.
Wiring - If I were to do a mk4 swap, i'd start with a front cut including dash and dash cluster. Then I would put everything in including that dash and cluster, computers, etc.. From what I've read, unless you use all the stock wiring, you may run into troubles, hence the front cut being required...
Cooling - Stock radiator should be fine, maybe upgrade the core and/or the fans, but check adaptability to the r32 ecu to switch them on. Otherwise, rad hoses can be made to order, or you should be able to find something to use and cut up, etc...
Accessories - Think of your Air Con, Alternator, Power Steering and the mounting points and wires, hoses, etc...
Gearbox - I'd probably leave it as a 5 speed (if you can) to make the conversion easier, but I would definitely put in an LSD with the extra KW's going through it...
Exhaust - Check the r32 and vr6 manifolds, head height, etc... If you have to do a custom job, it can get very very expensive, and if it's not done right it'll crack later down the track (like my extractors)
So, after all that, I wouldn't bother until you've done your suspension properly (KW V2s or similar), brakes (312mm minimum) and ensured all your body work and interior is up to scratch...
Now, expect to budget around $10k for engine, dash, wiring, and all other extras to get it going right!
Enjoy and good luck!!
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