Well after some mucking around with engine mounts (which has reduced the noise), we now think there is excessive backlash in the differential. It's only a very small amount but it is noticable when the car is off the ground, in neutral and the wheels are turned backwards and forwards by hand.
The noise presents itself with either wheel being turned and before the opposite wheel begins turning so it certainly isn't the CV joints as diagnosed by the dealer. I guess my option now is to revert the car to be as stock as possible and try another dealer (before naming/shaming the a$$holes that misdiagnosed my car and who seem hellbent on avoiding warranty work)
Resident grumpy old fart
VW - Metallic Paint, Radial Tyres, Laminated Windscreen, Electric Windows, VW Alloy Wheels, Variable Geometry Exhaust Driven Supercharger, Direct Unit Fuel Injection, Adiabatic Ignition, MacPherson Struts front, Torsion Beam rear, Coil Springs, Hydraulic Dampers, Front Anti-Roll Bar, Disc Brakes, Bosch ECU, ABS
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