OK,
I went to a Super Charge reseller and he told me that the battery was dying and from its original 720cca it was only reading just over 230cca, and to my no surprise he said that it was out of warranty. He thinks because the car was parked for a long period last year because the engine swap (about 5-6 weeks) might have caused some damage and made the alternator to charge it harder as it had some oxidation (that I haven't noticed before) on the positive.
Needed to get a new battery straight away as I almost ended up not able to crank the car after driving for about an hour.
The new battery is a Delkor (they had on special) and it's an EFB this time and comes with a 30m warranty. They told me the EFB it's the type that comes from the factory in VWs.
I tried to code using the OBD11 that I have in the car but it didn't allow me to select EFB or EFB+ and still coded as fleece. I'll try later with the VCDS or ODIS.
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