It may a fuel line rattle or air con hose related - there are TSB out on this. The fix is to reroute hoses and for the fuel line they replaced some of the fuel line including fuel filter. The vibrations can be caused in some funny places like my interior car door was rattling.
The fuel line runs from rear to front of the car under the driver side. I was told that variance in fuel pressure or fuel leak caused it. I had annoying rattle always at about 2000rpm and it disappeared after they did these two fixes.
While the rattle sound is different to mine it might be caused by same issue. I wonder if it might also be wastegate rattle altho I think it was fixed by that stage your car was built and happened under different conditions and toms.
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