Do you have the part number for the control panel, I know when they are replaced in the Passat they need a basic setting \ compressor run in cycle, before working correctly, which might be the cause of the "control module not programmed." code.
When the unit stops, does the clutch disengage or the compressor unload valve shut off, internal fan keeps running?
I would follow the tips here and try and rule each part out.
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