sounds like something is wired into the current track through that fuse that is something to do with ignition.
using the wiring diagrams, you need to trace all hte output on the fusebox (some will be on the back, some on the front) that connect to either side of that fuse. you mentioned something to do with emissions gear - well if theres a connection to the carb, it might be causing the problem. when you engage reverse, i reckon the lights are drawing too much current for your old and tired fusebox to handle, and it saturates that current track (often happes on track 15 in mk1's... things like turning on a blinker used to cause power failure to the stop solenoid on my old diesel and so the car would stall.)
once you find what it is thats connected to that same track that could be causing the car to stall, you may be able to wire it in separately.
alternately, you could pull the whole fuse box and attempt to repair the damaged track inside (can be done) or perhaps swap the whole fusebolx for another.
good luck.
'07 Touareg V6 TDI with air suspension
'98 Mk3 Cabriolet 2.0 8V
'99 A4 Quattro 1.8T
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