if the box was sealed up (reverse switch still in place and plugs in) it should be OK.
only thing is that if the oil wasnt drained out before intentionally, then it must have leaked out, which is not good if it drained out over time while the car was driving along.
that said, 4 speeds arent as finicky as 5 speeds, especially to oil level. on a 5 speed low oil will cause a 5th gear failure right quick, in a 4 speed this isnt such a problem.
personally i can't think of anything you havent already done to see if its ok.
'07 Touareg V6 TDI with air suspension
'98 Mk3 Cabriolet 2.0 8V
'99 A4 Quattro 1.8T
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