My 20 cents;
Replacing pads without replacing rotors is OK, but replacing rotors without replacing pads isn't something that I'd suggest.
Shake is usually a good indicator of rotor warpage, maybe fixable with a skim, but most likely new rotors.
If they are genuine VW brake pads they generally (but not always) don't squeal, they have plenty of carbon black to hep prevent that (hence dirty wheels pretty quickly). Aftermarket brake pads are a bit hit and miss.
When I change rotors is usually change brake fluid at the same time, a full change using the manual (up and down) method takes a while with 2 people, but cheaper than a pressure bleed at a dealer. Same result if done properly.
Engine misfire could be any number of things, you could try some new spark plugs, that's a cheapish fix. If that doesn't work then a trip to the dealer with plug in diagnostics might reveal the issue.
Cheers
Gary
Golf Mk7.5 R, Volvo S60 Polestar, Skyline R32GTST
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