To all the VW newbies like myself, may I suggest running the car in a fair bit and getting used to the 'car' before heading down to the dealership. I am as paranoid as most of you esp with all the niggly bits that don't sound/seem right with the car. Apart from the obvious faults that needed attention (particular to my car), now with 1000km+ on the clock, everything just seems to have gotten 'better'. Smooth running and (touch wood) everything else feels 'right'.
I woulnd't be overly concern about the fan as coreying suggested unless it starts over heating.
As for the smell, the only smell I got when the car was running under 500km, was this burning metal/metallic smell after long runs or high revving. I assumed that this was just the new car smell, exhaust fumes smells 'natural' now. 
And if it fails/breaks down it's VW's problem.
[MK6 GTI MY11 CW 3-door DSG Sunroof Detroits Dark Tint R LEDs APR Stage 1 (regrettably a few years late)]
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